PCR Cheat Sheet 2026
The 30 highest-yield PCR facts, distilled from real exam questions. Print it, save it as a PDF, or study it here โ free, no sign-up.
100 questions
150 min time limit
70.00% to pass
- Which standard curve slope falls OUTSIDE the commonly accepted 90-110% efficiency range? โ -3.85
- A results statement reads: 'Gene X was significantly upregulated.' What should be added to make it rigorous? โ The fold change, statistical test used, p-value, and sample size
- What is a common result of running too many cycles (e.g., 40-45) in endpoint PCR? โ Smearing and buildup of nonspecific products after the plateau
- Which PCR additive is commonly used to relieve inhibition by binding inhibitors such as phenolics and humic acids? โ Bovine serum albumin (BSA)
- What does high background noise on a gel suggest? โ Primer dimers or contamination
- What is the minimum recommended distance (amplicon size) between the forward and reverse primers for reliable standard PCR amplification? โ 100โ3000 bp
- Which collection tube is designed to stabilize intracellular RNA in whole blood at collection? โ PAXgene Blood RNA tube
- In the ฮฮCt method, a target gene shows a ฮฮCt of -2. What is its fold change relative to the calibrator, assuming 100% efficiency? โ 4-fold increase
- When using optical adhesive sealing films on 96-well PCR plates for real-time PCR, what critical quality issue must be avoided during application? โ Air bubbles between the film and plate wells, which scatter fluorescent signal
- What is the role of data in quality assurance & control programs for Polymerase Chain Reaction? โ Data provides objective evidence for decision-making and measuring progress
- How does UV irradiation of a PCR hood help prevent contamination? โ It induces thymine dimers and crosslinks that make contaminating DNA non-amplifiable
- Why should lab coats used in the post-PCR area never be worn into the pre-PCR area? โ They can carry amplicons that contaminate clean reagents and setups
- An extraction blank (reagent-only sample processed alongside specimens) is used to detect what? โ Contamination introduced during the extraction process
- How many unique patient identifiers do accrediting bodies generally require on a specimen sent for PCR testing? โ At least two
- What is the function of the buffer solution in PCR? โ Stabilizes pH and ionic strength
- When should a PCR specimen container be labeled? โ In the presence of the patient at the time of collection
- In acid phenol-chloroform extraction (pH ~4.5), where does RNA partition? โ Aqueous phase
- Which element is ESSENTIAL for an effective regulatory standards & compliance program in Polymerase Chain Reaction? โ Regular audits and continuous monitoring processes
- A conventional PCR gives no band for your samples, but the positive control amplifies strongly. What is the most likely cause? โ The sample template has inhibitors or is degraded
- For air pressure control, the pre-PCR (reagent preparation) room should ideally be: โ At positive pressure relative to adjacent areas
- How is RNA contamination prevented in DNA extraction? โ Add RNAse enzyme
- Which sample type is generally most challenging for PCR due to co-extracted inhibitors? โ Organic-rich soil and sediment
- A no-template control (NTC) shows amplification. What is the most likely interpretation? โ Reagents or the workspace are contaminated with target DNA or amplicon
- An A260 reading of 1.0 corresponds to approximately what concentration of double-stranded DNA? โ 50 ยตg/mL
- A temperature verification shows the denaturation step set at 95ยฐC actually reaches only 93.5ยฐC. What is the most likely effect on PCR? โ Incomplete template denaturation and reduced amplification efficiency
- Which barrier MOST commonly hinders effective scientific writing & communication in Polymerase Chain Reaction? โ Lack of active listening and assumptions about understanding
- What is a major advantage of magnetic bead-based extraction over manual spin columns in a high-throughput lab? โ It is easily automated without centrifugation
- Under CLIA, how many proficiency testing events per year are generally required for a regulated analyte? โ Three
- In Polymerase Chain Reaction, how does specimen collection & handling contribute to professional credibility? โ By demonstrating competence, maintaining standards, and delivering consistent results
- What is the optimal melting temperature (Tm) range for most PCR primers? โ 55โ65ยฐC
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